Change chart directory structure

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# Kustomize Manifest Tests
## E2E
There are 2 goals for the e2e tests:
1. Verify that core components can be applied and become Ready
2. Verify that core CRDs can be created and succeed
### Components
The e2e are installing everything by using the [single-install
command](../README.md#install-with-a-single-command). This means that all of
the core and common (Istio, Knativ, Cert Manager) are being installed and
included in the tests.
### Test Suite
The e2e tests are completely independent of the underlying K8s cluster, as well
as the platform of the cluster. These tests should be able to run in real
world clusters, as well as ephemeral ones like KinD.